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A
Actions (class in pyMSpec.pyisocalc.canopy.sum_formula_actions)
add_centroids() (pyMSpec.mass_spectrum.MassSpectrum method)
add_spectrum() (pyMSpec.mass_spectrum.MassSpectrum method)
(pyMSpec.MSdataset.MSdataset method)
add_transition() (pyMSpec.mass_spectrum.MSn_spectrum method)
amount() (pyMSpec.pyisocalc.pyisocalc.FormulaSegment method)
apodization() (in module pyMSpec.smoothing)
apply_gaussian() (in module pyMSpec.pyisocalc.pyisocalc)
apply_normalisation() (in module pyMSpec.normalisation)
apply_smoothing() (in module pyMSpec.smoothing)
average_mass() (pyMSpec.pyisocalc.pyisocalc.Element method)
(pyMSpec.pyisocalc.pyisocalc.FormulaSegment method)
(pyMSpec.pyisocalc.pyisocalc.SumFormula method)
C
cartesian() (in module pyMSpec.pyisocalc.pyisocalc)
,
[1]
charge() (pyMSpec.pyisocalc.pyisocalc.Element method)
(pyMSpec.pyisocalc.pyisocalc.FormulaSegment method)
(pyMSpec.pyisocalc.pyisocalc.SumFormula method)
check_zeros() (in module pyMSpec.normalisation)
combine_fragments() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
complete_isodist() (in module pyMSpec.pyisocalc.pyisocalc)
ConstantFWHM (class in pyMSpec.instrument)
ConstantResolvingPower (class in pyMSpec.instrument)
D
data_summary() (pyMSpec.MSdataset.MSdataset method)
E
Element (class in pyMSpec.pyisocalc.pyisocalc)
element() (pyMSpec.pyisocalc.pyisocalc.FormulaSegment method)
estimate_centroid_simple_weighting() (in module pyMSpec.centroid_detection)
expand_complex() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
expand_fragment() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
F
fast_change() (in module pyMSpec.smoothing)
format_error() (in module pyMSpec.pyisocalc.canopy.sum_formula)
FormulaSegment (class in pyMSpec.pyisocalc.pyisocalc)
FTICR (class in pyMSpec.instrument)
fwhm_at_mz() (pyMSpec.instrument.Instrument method)
fwhm_to_sigma() (in module pyMSpec.pyisocalc.pyisocalc)
G
gen_approx_gaussian() (in module pyMSpec.pyisocalc.pyisocalc)
gen_gaussian() (in module pyMSpec.pyisocalc.pyisocalc)
generate_mz_axis() (pyMSpec.instrument.Instrument method)
get_isotope_pattern() (pyMSpec.instrument.Instrument method)
get_principal_peak() (pyMSpec.instrument.Instrument method)
get_segments() (pyMSpec.pyisocalc.pyisocalc.SumFormula method)
get_spectrum() (pyMSpec.mass_spectrum.MassSpectrum method)
(pyMSpec.MSdataset.MSdataset method)
gradient() (in module pyMSpec.centroid_detection)
gradient_purePython() (in module pyMSpec.centroid_detection)
Grammar (class in pyMSpec.pyisocalc.canopy.sum_formula)
I
Instrument (class in pyMSpec.instrument)
InvalidFormulaError
M
mad() (in module pyMSpec.normalisation)
make_element() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
make_formula() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
make_number() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
make_sf_adduct_database() (in module pyMSpec.pyisocalc.tools)
make_sf_adduct_optimusfilter() (in module pyMSpec.pyisocalc.tools)
make_simple_fragment() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
mass_ratios() (pyMSpec.pyisocalc.pyisocalc.Element method)
mass_spectrum (in module pyMSpec.mass_spectrum)
masses() (pyMSpec.pyisocalc.pyisocalc.Element method)
MassSpectrum (class in pyMSpec.mass_spectrum)
median() (in module pyMSpec.smoothing)
MSdataset (class in pyMSpec.MSdataset)
MSn_spectrum (class in pyMSpec.mass_spectrum)
multiply_by_sign() (pyMSpec.pyisocalc.canopy.sum_formula_actions.Actions method)
N
name() (pyMSpec.pyisocalc.pyisocalc.Element method)
none() (in module pyMSpec.normalisation)
normalise_sf() (in module pyMSpec.pyisocalc.tools)
normalise_spectrum() (pyMSpec.mass_spectrum.MassSpectrum method)
normalize() (in module pyMSpec.pyisocalc.pyisocalc)
nosmooth() (in module pyMSpec.smoothing)
number() (pyMSpec.pyisocalc.pyisocalc.Element method)
O
Orbitrap (class in pyMSpec.instrument)
Orbitrap_HF (in module pyMSpec.instrument)
P
parse() (in module pyMSpec.pyisocalc.canopy.sum_formula)
(pyMSpec.pyisocalc.canopy.sum_formula.Parser method)
ParseError
Parser (class in pyMSpec.pyisocalc.canopy.sum_formula)
parseSumFormula() (in module pyMSpec.pyisocalc.pyisocalc)
perfect_pattern() (in module pyMSpec.pyisocalc.pyisocalc)
pick_max_() (in module pyMSpec.centroid_detection)
points_per_mz() (pyMSpec.instrument.Instrument method)
pyMSpec (module)
pyMSpec.centroid_detection (module)
pyMSpec.instrument (module)
pyMSpec.mass_spectrum (module)
pyMSpec.MSdataset (module)
pyMSpec.normalisation (module)
pyMSpec.pyisocalc (module)
pyMSpec.pyisocalc.canopy (module)
pyMSpec.pyisocalc.canopy.sum_formula (module)
pyMSpec.pyisocalc.canopy.sum_formula_actions (module)
pyMSpec.pyisocalc.periodic_table (module)
pyMSpec.pyisocalc.pyisocalc (module)
pyMSpec.pyisocalc.tools (module)
pyMSpec.smoothing (module)
Q
qTOF (in module pyMSpec.instrument)
R
rebin() (in module pyMSpec.smoothing)
REGEX_1 (pyMSpec.pyisocalc.canopy.sum_formula.Grammar attribute)
REGEX_2 (pyMSpec.pyisocalc.canopy.sum_formula.Grammar attribute)
REGEX_3 (pyMSpec.pyisocalc.canopy.sum_formula.Grammar attribute)
REGEX_4 (pyMSpec.pyisocalc.canopy.sum_formula.Grammar attribute)
resolving_power_at_mz() (pyMSpec.instrument.ConstantResolvingPower method)
(pyMSpec.instrument.FTICR method)
(pyMSpec.instrument.Instrument method)
(pyMSpec.instrument.Orbitrap method)
rms() (in module pyMSpec.normalisation)
S
sg_smooth() (in module pyMSpec.smoothing)
shift_and_scale() (in module pyMSpec.normalisation)
sigma_at_mz() (pyMSpec.instrument.ConstantFWHM method)
(pyMSpec.instrument.Instrument method)
single_pattern_fft() (in module pyMSpec.pyisocalc.pyisocalc)
,
[1]
smooth_spectrum() (pyMSpec.mass_spectrum.MassSpectrum method)
sqrt() (in module pyMSpec.normalisation)
SumFormula (class in pyMSpec.pyisocalc.pyisocalc)
Synapt (in module pyMSpec.instrument)
T
tic() (in module pyMSpec.normalisation)
tic_range() (in module pyMSpec.normalisation)
TOF (in module pyMSpec.instrument)
TOF_reflector (in module pyMSpec.instrument)
total_points() (in module pyMSpec.pyisocalc.pyisocalc)
TreeNode (class in pyMSpec.pyisocalc.canopy.sum_formula)
TreeNode1 (class in pyMSpec.pyisocalc.canopy.sum_formula)
TreeNode2 (class in pyMSpec.pyisocalc.canopy.sum_formula)
TreeNode3 (class in pyMSpec.pyisocalc.canopy.sum_formula)
TreeNode4 (class in pyMSpec.pyisocalc.canopy.sum_formula)
TreeNode5 (class in pyMSpec.pyisocalc.canopy.sum_formula)
trim() (in module pyMSpec.pyisocalc.pyisocalc)
,
[1]
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